ZFIN ID: ZDB-GENE-990415-10
Gene Name: L1 cell adhesion molecule, paralog a
Gene Symbol: l1cama
Sequence Ontology ID : SO:0000704

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Previous Names: nadl1.2 (1), sb:eu320, sb:eu917, wu:fq26g05

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 25 figures from 7 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu917]
  12 figures (23 images) from Rauch et al., 2003 [fq26g05]
  6 figures (12 images) from Thisse et al., 2005 [eu320]
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
  brain, central nervous system, cranial ganglion, diencephalon (all 16) expand
Curated Microarray Expression: GEO (1)
PHENOTYPE
Data: Fig. 2 from Wolman et al., 2007
Observed in: axonal fasciculation, medial longitudinal fasciculus
DISEASE ASSOCIATED WITH l1cama HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
hydrocephalus Hydrocephalus due to aqueductal stenosis 307000
Hydrocephalus with congenital idiopathic intestinal pseudoobstruction 307000
Hydrocephalus with Hirschsprung disease 307000
MASA syndrome CRASH syndrome 303350
MASA syndrome 303350
Corpus callosum, partial agenesis of 304100
GENE ONTOLOGY
Ontology GO Term
Biological Process positive regulation of axon extension (more)
Cellular Component axonal growth cone (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003598 (1)
  • InterPro:IPR003599 (1)
  • InterPro:IPR003961 (1)
  • InterPro:IPR007110 (1)
  • InterPro:IPR013151 (1)
  • InterPro:IPR013783 (1)
  • InterPro:IPR026966 (1)
  • PROSITE:PS50835 (1)
  • PROSITE:PS50853 (1)
  • Pfam:PF00041 (1)
  • Pfam:PF00047 (1)
  • Pfam:PF13882 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA nadl1.2-001 (1) 4119
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM l1cama No data available
    MARKER RELATIONSHIPS
    l1camaContained in: [BAC] DKEY-23G9 (1) (order this), DKEY-242A8 (1) (order this)
    l1camaEncodes: [EST] eu320 (1), eu917 (1), fq26g05 (1) (order this)
    [cDNA] MGC:193557 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131361 (1) 4119bp
    Genomic GenBank:BX664745 (1) 261934bp Blast at MegaBLAST
    Polypeptide UniProtKB:B3DGN9 (1) 1271aa
    Sequence Clusters UniGene:75067 (1)
    Sequence Information (all 29)
    OTHER l1cama GENE PAGES
  • Alliance (1)
  • Gene:30634 (1)
  • VEGA:OTTDARG00000021314 (1)
  • Ensembl(GRCz10):ENSDARG00000007149 (1)
  • ORTHOLOGY for l1cama (Chr: 23)
    CITATIONS (36)