ZFIN ID: ZDB-GENE-980526-484
Gene Name: LIM homeobox 5
Gene Symbol: lhx5
Sequence Ontology ID : SO:0000704

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 23 figures from 16 publications
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Larval:Day 4 (96.0h-120.0h)
  caudal tuberculum, CiA, diencephalon, diencephalon dopaminergic neuron (all 18) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la021831Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • la021832Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23894 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-lhx5 (1), MO2-lhx5 (1)
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lhx5 HUMAN ORTHOLOGNo data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process forebrain development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001781 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00478 (1)
  • PROSITE:PS50023 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF00412 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA lhx5-001 (1) 2039
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM lhx5
    Tg(lhx5:GFP), TgBAC(lhx5:Kaede)
    MARKER RELATIONSHIPS
    lhx5Contained in: [BAC] CH211-32G22 (1) (order this), DKEY-60I9 (1) (order this)
    lhx5Contains: [SNP] rs3729089 (1)
    lhx5Encodes: [cDNA] MGC:109837 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131218 (1) 2016bp
    Genomic GenBank:AL953866 (1) 198925bp
    Select Tool
    Polypeptide UniProtKB:P52889 (1) 399aa
    Sequence Clusters UniGene:75068 (1)
    Sequence Information (all 13)
    OTHER lhx5 GENE PAGES
  • Alliance (1)
  • Gene:30465 (1)
  • VEGA:OTTDARG00000020987 (1)
  • Ensembl(GRCz10):ENSDARG00000057936 (1)
  • ORTHOLOGY for lhx5 (Chr: 21)
    CITATIONS (56)