ZFIN ID: ZDB-GENE-980526-399
Gene Name: paired box 9
Gene Symbol: pax9    Nomenclature History

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Previous Name: etID309776.17 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 17 Mapping Details/Browsers
Description: Exhibits sequence-specific DNA binding activity. Involved in roof of mouth development. Predicted to localize to nucleus. Is expressed in several structures, including head mesenchyme; neural tube; olfactory region; oral ectoderm; and pharyngeal arch. Human ortholog(s) of this gene implicated in tooth agenesis. Orthologous to human PAX9 (paired box 9).
Genome Resources: Alliance (1),  Gene:30558 (1),  Ensembl(GRCz11):ENSDARG00000053829 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-pax9 N/A 2
MO2-pax9 N/A 1
MO3-pax9 N/A 1
MO4-pax9 N/A 1
MO5-pax9 N/A 1
MO6-pax9 N/A 1
DISEASE ASSOCIATED WITH pax9 HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
tooth agenesis Alliance Tooth agenesis, selective, 3 604625
DISEASE ASSOCIATED WITH pax9 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process roof of mouth development (more)
Cellular Component nucleus (more)
Molecular Function sequence-specific DNA binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA pax9-201 (1)    Ensembl 1763
pax9-202 (1)    Ensembl 1903
pax9-203 (1)    Ensembl 759
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM pax9 No data available
MARKER RELATIONSHIPS
pax9 Contained in: [BAC] DKEY-34N18 (1) (order this)
pax9 Encodes: [EST] eu604 (1)
[cDNA] MGC:91793 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_131298 (1) 1939 nt
Genomic GenBank:BX511145 (1) 102544 nt
Select Tool
Polypeptide UniProtKB:Q98865 (1) 343 aa
Sequence Information (all 19)
ORTHOLOGY for pax9 ( Chr: 17 )
CITATIONS (56)