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ZIRC
ZFIN ID: ZDB-GENE-980526-399
Gene Name: paired box 9
Gene Symbol: pax9    Nomenclature History

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Previous Name: etID309776.17 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 17 Mapping Details/Browsers
Description: Exhibits sequence-specific DNA binding activity. Involved in hard palate development. Predicted to localize to the nucleus. Human ortholog(s) of this gene implicated in tooth agenesis. Is expressed in several structures, including head mesenchyme; neural tube; olfactory region; oral ectoderm; and pharyngeal arch. Orthologous to human PAX9 (paired box 9).
Genome Resources: Alliance (1),  Gene:30558 (1),  Ensembl(GRCz11):ENSDARG00000053829 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-pax9 N/A 2
MO2-pax9 N/A 1
MO3-pax9 N/A 1
MO4-pax9 N/A 1
MO5-pax9 N/A 1
MO6-pax9 N/A 1
DISEASE ASSOCIATED WITH pax9 HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
tooth agenesis Alliance Tooth agenesis, selective, 3 604625
DISEASE ASSOCIATED WITH pax9 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process hard palate development (more)
Cellular Component nucleus (more)
Molecular Function sequence-specific DNA binding (more)
GO Terms (all 8)
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA pax9-201 (1)    Ensembl 1763
pax9-202 (1)    Ensembl 1903
pax9-203 (1)    Ensembl 759
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM pax9 No data available
MARKER RELATIONSHIPS
pax9 Contained in: [BAC] DKEY-34N18 (1) (order this)
pax9 Encodes: [EST] eu604 (1)
[cDNA] MGC:91793 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_131298 (1) 1939 bp
Genomic GenBank:BX511145 (1) 102544 bp
Select Tool
Polypeptide UniProtKB:Q98865 (1) 343 aa
Sequence Clusters UniGene:1467 (1)
Sequence Information (all 20)
ORTHOLOGY for pax9 ( Chr: 17 )
CITATIONS (55)