ZFIN ID: ZDB-GENE-980526-399
Gene Name: paired box 9
Gene Symbol: pax9
Sequence Ontology ID : SO:0000704

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Previous Name: etID309776.17 (1)

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Location: Chr: 17 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits sequence-specific DNA binding activity; involved in hard palate development; predicted to localize to the nucleus; orthologous to human PAX9 (paired box 9).
GENE EXPRESSION
All Expression Data: 24 figures from 15 publications
Directly Submitted Expression Data: 6 figures (12 images) from Thisse et al., 2005 [eu604]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: 2 figures from 2 publications
Observed in:
DISEASE ASSOCIATED WITH pax9 HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
tooth agenesis Tooth agenesis, selective, 3 604625
DISEASE ASSOCIATED WITH pax9 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process hard palate development (more)
Cellular Component nucleus (more)
Molecular Function sequence-specific DNA binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001523 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR033204 (1)
  • InterPro:IPR036388 (1)
  • PROSITE:PS00034 (1)
  • PROSITE:PS51057 (1)
  • Pfam:PF00292 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA pax9-201 (1) 1763
    pax9-202 (1) 1903
    pax9-203 (1) 759
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM pax9 No data available
    MARKER RELATIONSHIPS
    pax9Contained in: [BAC] DKEY-34N18 (1) (order this)
    pax9Encodes: [EST] eu604 (1)
    [cDNA] MGC:91793 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131298 (1) 1939bp
    Genomic GenBank:BX511145 (1) 102544bp
    Select Tool
    Polypeptide UniProtKB:Q98865 (1) 343aa
    Sequence Clusters UniGene:1467 (1)
    Sequence Information (all 20)
    OTHER pax9 GENE PAGES
  • Alliance (1)
  • Gene:30558 (1)
  • VEGA:OTTDARG00000020520 (1)
  • Ensembl(GRCz11):ENSDARG00000053829 (2)
  • ORTHOLOGY for pax9 (Chr: 17)
    CITATIONS (55)