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ZIRC
ZFIN ID: ZDB-GENE-980526-284
Gene Name: retinoic acid receptor, alpha a
Gene Symbol: raraa
Sequence Ontology ID : SO:0000704

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Previous Names: rara2a (1), rara, zRAR, zrara, etID309833.12 (1), NR1B1-A (1), nr1b1a (1), RARalpha-A (1), zgc:109797, zRAR-alpha-2.A, zRAR-alpha

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits nuclear receptor activity. Involved in hindbrain morphogenesis; liver development; and response to retinoic acid. Predicted to localize to the RNA polymerase II transcription factor complex.  ...
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa31860 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 3 from Garnaas et al., 2012
    Observed in:
    DISEASE ASSOCIATED WITH raraa HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    acute promyelocytic leukemia Leukemia, acute promyelocytic 612376
    DISEASE ASSOCIATED WITH raraa VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process hindbrain morphogenesis (more)
    Cellular Component nucleus (more)
    Molecular Function nuclear receptor activity (more)
    GO Terms (all 30)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA raraa-201 (1) 2492
    raraa-203 (1) 638
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM raraa
    MARKER RELATIONSHIPS
    raraaContained in: [BAC] DKEY-56E5 (1) (order this)
    raraaEncodes: [EST] rar-alpha-2 (1) (order this), s74155 (1) (order this)
    [cDNA] MGC:109797 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131406 (1) 2197bp
    Genomic GenBank:BX890609 (1) 228713bp Blast at MegaBLAST
    Polypeptide UniProtKB:T2DKU4 (1) 447aa
    Sequence Clusters UniGene:193 (1)
    Sequence Information (all 24)
    ORTHOLOGY for raraa (Chr: 12)
    CITATIONS (75)