Gene
pkd1l2b
- ID
- ZDB-GENE-141222-87
- Name
- polycystic kidney disease 1 like 2b
- Symbol
- pkd1l2b Nomenclature History
- Previous Names
-
- pkd1l2
- si:ch1073-128e6.1
- si:ch211-168k15.4
- si:ch211-168k15.5
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Description
- Predicted to have calcium channel activity. Predicted to be involved in detection of mechanical stimulus. Predicted to localize to membrane. Is expressed in amacrine cell; ceratobranchial cartilage; pharyngeal arch cartilage; pharynx; and retinal ganglion cell layer. Orthologous to human PKD1L2 (polycystin 1 like 2 (gene/pseudogene)).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 7 figures from England et al., 2017
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR000203 | GPS motif |
| Domain | IPR000922 | D-galactoside/L-rhamnose binding SUEL lectin domain |
| Domain | IPR001024 | PLAT/LH2 domain |
| Domain | IPR001304 | C-type lectin-like |
| Domain | IPR013122 | Polycystin cation channel, PKD1/PKD2 |
| Domain | IPR042060 | Polycystin-1 like, PLAT/LH2 domain |
| Domain | IPR046791 | Polycystin domain |
| Family | IPR003915 | Polycystic kidney disease type 2 protein |
| Family | IPR051223 | Polycystin |
| Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
| Homologous_superfamily | IPR016187 | C-type lectin fold |
| Homologous_superfamily | IPR036392 | PLAT/LH2 domain superfamily |
| Homologous_superfamily | IPR043159 | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily |
| Homologous_superfamily | IPR046338 | GAIN domain superfamily |
Domain Details Per Protein
| Protein | Length | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | D-galactoside/L-rhamnose binding SUEL lectin domain | D-galactoside/L-rhamnose binding SUEL lectin domain superfamily | GAIN domain superfamily | GPS motif | PLAT/LH2 domain | PLAT/LH2 domain superfamily | Polycystic kidney disease type 2 protein | Polycystin | Polycystin-1 like, PLAT/LH2 domain | Polycystin cation channel, PKD1/PKD2 | Polycystin domain |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:E7F436
|
124 | ||||||||||||||
|
UniProtKB:E7F2U9
|
702 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
pkd1l2b-201
(1)
|
Ensembl | 2,597 nt | ||
| mRNA |
pkd1l2b-203
(1)
|
Ensembl | 3,187 nt | ||
| ncRNA |
pkd1l2b-002
(1)
|
Ensembl | 892 nt |
Interactions and Pathways
No data available
Plasmids
No data available