ZFIN ID: ZDB-GENE-130530-842
Gene Name: si:ch211-186j3.6
Gene Symbol: si:ch211-186j3.6    Nomenclature History

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Previous Name: zmp:0000000839 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 7 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Predicted to be involved in homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to localize to the integral component of membrane and plasma membrane.
Genome Resources: Alliance (1),  Gene:556807 (1),  Ensembl(GRCz11):ENSDARG00000078088 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15416 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15748 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21053 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa27032 Point Mutation Unknown Premature Stop ENU
    sa34165 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34166 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40991 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40992 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40993 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40994 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45294 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-186j3.6 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-186j3.6 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cell adhesion (more)
    Cellular Component integral component of membrane (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Conserved_site IPR013032 EGF-like, conserved site
    Conserved_site IPR020894 Cadherin conserved site
    Domain IPR000233 Cadherin, cytoplasmic domain
    Domain IPR000742 EGF-like domain
    Domain IPR001791 Laminin G domain
    Domain IPR001881 EGF-like calcium-binding domain
    Domain IPR002126 Cadherin-like
    Homologous_superfamily IPR013320 Concanavalin A-like lectin/glucanase domain superfamily
    Homologous_superfamily IPR015919 Cadherin-like superfamily
    Homologous_superfamily IPR027397 Catenin binding domain superfamily
    PTM IPR000152 EGF-type aspartate/asparagine hydroxylation site
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-186j3.6-201 (1)    Ensembl 10842
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-186j3.6 No data available
    MARKER RELATIONSHIPS
    si:ch211-186j3.6 Contained in: [BAC] CH73-367K8 (1), CH211-186J3 (1), DKEY-122H9 (1) (order this), DKEY-223N8 (1) (order this), DKEYP-12H3 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_001920953 (1) 12089 nt
    Genomic GenBank:CT030718 (1) 177888 nt
    Select Tool
    Polypeptide UniProtKB:F1QK15 (1) 2902 aa
    Sequence Information (all 13)
    ORTHOLOGY for si:ch211-186j3.6 ( Chr: 7 )
    CITATIONS (15)