ZFIN ID: ZDB-GENE-120314-2
Gene Name: chromodomain helicase DNA binding protein 5
Gene Symbol: chd5    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have ATP binding activity and metal ion binding activity. Involved in ATP-dependent chromatin remodeling; embryonic viscerocranium morphogenesis; and head development. Predicted to localize to integral component of membrane and nucleus. Is expressed in brain; eye; and testis. Orthologous to human CHD5 (chromodomain helicase DNA binding protein 5).
Genome Resources: Alliance (1),  Gene:553422 (1),  Ensembl(GRCz11):ENSDARG00000105083 (1)
GENE EXPRESSION
All Expression Data: 2 figures from Bishop et al., 2015
Wild-type Stages, Structures: Gastrula:Shield (6.0h-8.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa21934 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35107 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-chd5 N/A 1
    MO2-chd5 N/A 1
    MO3-chd5 N/A 1
    DISEASE ASSOCIATED WITH chd5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH chd5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process ATP-dependent chromatin remodeling (more)
    Cellular Component integral component of membrane (more)
    Molecular Function ATP binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA chd5-202 (1)    Ensembl 9290
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM chd5 No data available
    MARKER RELATIONSHIPS
    chd5 Contained in: [BAC] CH211-199M8 (1), CH211-218G23 (1), DKEY-196G21 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_003199497 (1) 6349 nt
    Genomic GenBank:BX548000 (1) 216767 nt Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4IJ89 (1) 1980 aa
    Sequence Information (all 24)
    ORTHOLOGY for chd5 ( Chr: 11 )
    CITATIONS (16)