Gene

si:ch211-199g17.9

ID

ZDB-GENE-120214-17

Name

si:ch211-199g17.9

Symbol

si:ch211-199g17.9 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to act upstream of or within synaptonemal complex assembly. Predicted to be active in synaptonemal complex. Human ortholog(s) of this gene implicated in primary ovarian insufficiency 12 and spermatogenic failure 15. Orthologous to several human genes including SYCE1L (synaptonemal complex central element protein 1 like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa36913	Allele with one point mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With si:ch211-199g17.9 Human Ortholog

No data available

Associated With si:ch211-199g17.9 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR026676	Synaptonemal complex central element protein 1

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Domain Details Per Protein

Protein	Additional Resources	Length	Synaptonemal complex central element protein 1
UniProtKB:B3DFT5	InterPro
UniProtKB:A0AB32TE27	InterPro	202

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Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 19

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	si:ch211-199g17.9-201 (1) Ensembl	Ensembl	1,669 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-199g17.9-202 (1) Ensembl	Ensembl	508 nt	Select Tool ZFIN BLAST
mRNA	si:ch211-199g17.9-203 (1) Ensembl	Ensembl	327 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-199G17	BX649384	ZFIN Curated Data
Encodes	cDNA	MGC:193673	BC162158	ZFIN Curated Data
Encodes	cDNA	MGC:193679	BC162162	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001328704 (1)	1670 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX649384 (1)	190998 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0AB32TE27 (1)	202 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

No data available

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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