Gene

trim107

ID

ZDB-GENE-110919-5

Name

tripartite motif containing 107

Symbol

trim107 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have metal ion binding activity. Human ortholog(s) of this gene implicated in Henoch-Schoenlein purpura; asthma; familial Mediterranean fever; hematologic cancer (multiple); and lung disease. Orthologous to several human genes including MEFV (MEFV innate immuity regulator, pyrin); TRIM6-TRIM34 (TRIM6-TRIM34 readthrough); and RNF39 (ring finger protein 39).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With trim107 Human Ortholog

No data available

Associated With trim107 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017907	Zinc finger, RING-type, conserved site
Domain	IPR001841	Zinc finger, RING-type
Domain	IPR001870	B30.2/SPRY domain
Domain	IPR003879	Butyrophylin-like, SPRY domain
Domain	IPR006574	SPRY-associated
Homologous_superfamily	IPR013083	Zinc finger, RING/FYVE/PHD-type
Homologous_superfamily	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily
Homologous_superfamily	IPR043136	B30.2/SPRY domain superfamily

Domain Details Per Protein

Protein	Length	B30.2/SPRY domain	B30.2/SPRY domain superfamily	Butyrophylin-like, SPRY domain	Concanavalin A-like lectin/glucanase domain superfamily	SPRY-associated	Zinc finger, RING/FYVE/PHD-type	Zinc finger, RING-type	Zinc finger, RING-type, conserved site
UniProtKB:F1R358 InterPro	469

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	trim107-201 (1) Ensembl	Havana	1492 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	trim107-202 (1) Ensembl	Havana	605 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations