ZFIN ID: ZDB-GENE-110408-2
Gene Name: si:ch211-117c9.5
Gene Symbol: si:ch211-117c9.5    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have choline transmembrane transporter activity and creatine:sodium symporter activity. Predicted to localize to the plasma membrane.
Genome Resources: Alliance (1),  Gene:100150452 (1),  Ensembl(GRCz11):ENSDARG00000071235 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
All Expression Data: Fig. 2 from Guerra et al., 2018
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa24253 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29874 Point Mutation Unknown Premature Stop ENU
    sa39396 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-117c9.5 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-117c9.5 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function neurotransmitter:sodium symporter activity (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Family IPR000175 Sodium:neurotransmitter symporter
    Homologous_superfamily IPR037272 Sodium:neurotransmitter symporter superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-117c9.5-201 (1)    Ensembl 2673
    si:ch211-117c9.5-202 (1)    Ensembl 804
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-117c9.5 No data available
    MARKER RELATIONSHIPS
    si:ch211-117c9.5 Contained in: [BAC] CH211-117C9 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001922928 (1) 2722 bp
    Genomic GenBank:BX005466 (1) 158916 bp
    Select Tool
    Polypeptide UniProtKB:E7EXM3 (1) 652 aa
    Sequence Information (all 8)
    ORTHOLOGY for si:ch211-117c9.5 ( Chr: 23 )
    CITATIONS (15)