Gene

smc6

ID

ZDB-GENE-110303-1

Name

structural maintenance of chromosomes 6

Symbol

smc6 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 17 Mapping Details/Browsers

Description

Orthologous to human SMC6 (structural maintenance of chromosomes 6).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Li et al., 2021

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With smc6 Human Ortholog

No data available

Associated With smc6 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR003395	RecF/RecN/SMC, N-terminal
Domain	IPR038729	Rad50/SbcC-type AAA domain
Homologous_superfamily	IPR027417	P-loop containing nucleoside triphosphate hydrolase

Domain Details Per Protein

Protein	Length	P-loop containing nucleoside triphosphate hydrolase	Rad50/SbcC-type AAA domain	RecF/RecN/SMC, N-terminal
UniProtKB:A0A8M9Q634 InterPro	1097
UniProtKB:A0A8M2B5G4 InterPro	1094
UniProtKB:X1WGQ9 InterPro	1093
UniProtKB:A0A8M9Q235 InterPro	678
UniProtKB:A0A8M6YTX5 InterPro	674
UniProtKB:A0A8M9PV42 InterPro	1098

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	smc6-203 (1) Ensembl	Havana	3592 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	smc6-002 (1) Ensembl	Havana	505 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations