Gene

rbm10

ID

ZDB-GENE-100922-245

Name

RNA binding motif protein 10

Symbol

rbm10 Nomenclature History

Previous Names

si:ch73-205c16.2

Type

protein_coding_gene

Location

Chr: 23 Mapping Details/Browsers

Description

Predicted to have RNA binding activity and metal ion binding activity. Predicted to be involved in RNA splicing; regulation of alternative mRNA splicing, via spliceosome; and regulation of apoptotic process. Human ortholog(s) of this gene implicated in TARP syndrome. Orthologous to human RBM10 (RNA binding motif protein 10).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbm10 Human Ortholog

Disease Ontology Term	Multi-Species Data	OMIM Term	OMIM Phenotype ID
TARP syndrome	Alliance	TARP syndrome	311900

Associated With rbm10 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR001876	Zinc finger, RanBP2-type
Domain	IPR013087	Zinc finger C2H2-type
Domain	IPR034992	RNA-binding protein 10, RNA recognition motif 2
Domain	IPR035618	RBM10, OCRE domain
Domain	IPR041591	OCRE domain
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily
Homologous_superfamily	IPR036443	Zinc finger, RanBP2-type superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	OCRE domain	RBM10, OCRE domain	RNA-binding domain superfamily	RNA-binding protein 10, RNA recognition motif 2	RNA recognition motif domain	Zinc finger C2H2-type	Zinc finger, RanBP2-type	Zinc finger, RanBP2-type superfamily
UniProtKB:A0A8M3AY14 InterPro	897
UniProtKB:A0A8M3AMK0 InterPro	612
UniProtKB:F1R9N7 InterPro	898
UniProtKB:A0A8M3AV06 InterPro	887

Transcripts

Genome Browsers

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbm10-202 (1) Ensembl	Havana	596 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	rbm10-203 (1) Ensembl	Havana	798 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations