ZFIN Gene: clip2

ZFIN ID: ZDB-GENE-100727-3

ZFIN ID: ZDB-GENE-100727-3

Gene Name:

CAP-GLY domain containing linker protein 2

Gene Symbol:

clip2 Nomenclature History

Previous Name:

Gene Type:

protein_coding_gene

Location:

Chr: 5 Mapping Details/Browsers

Description:

Predicted to have microtubule plus-end binding activity. Predicted to be involved in cytoplasmic microtubule organization. Predicted to localize to cell cortex; microtubule plus-end; and nucleus. Orthologous to human CLIP2 (CAP-Gly domain containing linker protein 2).

Genome Resources:

Alliance (1), Gene:556406 (1), Ensembl(GRCz11):ENSDARG00000059596 (2)

GENE EXPRESSION
High Throughput Expression:	GEO (1) , Expression Atlas (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
sa15415	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa20554	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa33734	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa33735	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa38514	Point Mutation	Unknown	Splice Site	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa45229	Point Mutation	Unknown	Premature Stop	ENU	Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH clip2 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH clip2 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	cytoplasmic microtubule organization (more)
Cellular Component	cytoplasm (more)
Molecular Function	microtubule plus-end binding (more)

GO Terms (all 5)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
aberrant processed transcript	clip2-203 (1)	830	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	clip2-202 (1)	3843	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	clip2-204 (1)	624	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM clip2 No data available

MARKER RELATIONSHIPS

clip2 Contained in:

[BAC] DKEY-32E10 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:XM_005172017 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:BX901917 (1)	238589 nt	Blast at MegaBLAST
Polypeptide	UniProtKB:A0A286YAU5 (1)	1051 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 22)

ORTHOLOGY for clip2 ( Chr: 5 )

CITATIONS (18)

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