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ZIRC
ZFIN ID: ZDB-GENE-100525-3
Gene Name: AT rich interactive domain 5A (MRF1-like)
Gene Symbol: arid5a    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have transcription regulatory region DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to the nucleus. Orthologous to human ARID5A (AT-rich interaction domain 5A).
Genome Resources: Alliance (1),  Gene:100462698 (1),  Ensembl(GRCz11):ENSDARG00000077120 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa8986 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-arid5a N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH arid5a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH arid5a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 2)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001606 (1)
  • InterPro:IPR036431 (1)
  • PROSITE:PS51011 (1)
  • Pfam:PF01388 (1)
  • TRANSCRIPTS No data available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM arid5a No data available
    MARKER RELATIONSHIPS No data available
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001327774 (1)
    Genomic GenBank:CABZ01070469 (1) 28086 bp
    Select Tool
    Polypeptide UniProtKB:B0BLY1 (1) 600 aa
    Sequence Clusters UniGene:85807 (1)
    Sequence Information (all 10)
    ORTHOLOGY for arid5a ( Chr: 8 )
    CITATIONS (16)