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General Information
ZIRC
ZFIN ID: ZDB-GENE-100326-1
Gene Name: trinucleotide repeat containing 18
Gene Symbol: tnrc18
Sequence Ontology ID : SO:0000704

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Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have chromatin binding activity; orthologous to human TNRC18 (trinucleotide repeat containing 18).
GENE EXPRESSION
All Expression Data: Fig. 4 from Armant et al., 2013
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH tnrc18 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH tnrc18 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process chromatin silencing (more)
Cellular Component chromatin (more)
Molecular Function chromatin binding (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001025 (1)
  • PROSITE:PS51038 (1)
  • Pfam:PF01426 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA tnrc18-202 (1) 12957
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tnrc18 No data available
    MARKER RELATIONSHIPS
    tnrc18Contained in: [BAC] CH211-194I10 (1) (order this), CH211-215A12 (1) (order this)
    tnrc18Encodes: [EST] wz13058
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_002661214 (1)
    Genomic GenBank:AL928657 (1) 187734bp
    Select Tool
    Polypeptide UniProtKB:X1WHA2 (1) 2936aa
    Sequence Clusters UniGene:155743 (1)
    Sequence Information (all 17)
    ORTHOLOGY for tnrc18 (Chr: 3)
    CITATIONS (14)