ZFIN ID: ZDB-GENE-100119-2
Gene Name: collagen, type XXVII, alpha 1b
Gene Symbol: col27a1b    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have extracellular matrix structural constituent. Involved in bone mineralization; notochord morphogenesis; and skeletal system development. Predicted to localize to extracellular matrix and extracellular space. Is expressed in cranial cartilage; notochord; and notochord posterior region. Orthologous to human COL27A1 (collagen type XXVII alpha 1 chain).
Genome Resources: Alliance (1),  Gene:560145 (1),  Ensembl(GRCz11):ENSDARG00000099930 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa14233 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31484 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-col27a1b N/A 1
    MO2-col27a1b N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col27a1b HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Steel syndrome 615155
    DISEASE ASSOCIATED WITH col27a1b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process bone mineralization (more)
    Cellular Component collagen trimer (more)
    Molecular Function extracellular matrix structural constituent (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS No data available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col27a1b No data available
    MARKER RELATIONSHIPS No data available
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001080575 (1) 4977 nt
    Genomic GenBank:CR769770 (1) 72616 nt
    Select Tool
    Polypeptide UniProtKB:A0MSJ1 (1) 1658 aa
    Sequence Information (all 14)
    ORTHOLOGY for col27a1b ( Chr: 5 )
    CITATIONS (15)