header logo image header logo text
Downloads Login
Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-091204-46
Gene Name: RNA binding fox-1 homolog 3b
Gene Symbol: rbfox3b    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: rbfox3l, si:ch73-322f21.1 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have mRNA binding activity. Predicted to be involved in nervous system development and regulation of alternative mRNA splicing, via spliceosome. Localizes to the nucleus. Is expressed in brain and spinal cord. Orthologous to human RBFOX3 (RNA binding fox-1 homolog 3).
Genome Resources: Alliance (1),  Gene:559412 (1),  Ensembl(GRCz11):ENSDARG00000074310 (1)
GENE EXPRESSION
All Expression Data: Fig. 2 from Won et al., 2016
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la024396Tg Transgenic Insertion Unknown Unknown DNA
sa33097 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH rbfox3b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH rbfox3b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of RNA splicing (more)
    Cellular Component nucleus (more)
    Molecular Function nucleic acid binding (more)
    GO Terms (all 8)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA rbfox3b-202 (1)    Ensembl 1254
    rbfox3b-204 (1)    Ensembl 861
    ncRNA rbfox3b-003 (1)    Ensembl 425
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM rbfox3b No data available
    MARKER RELATIONSHIPS
    rbfox3b Contained in: [BAC] CH73-201A22 (1) (order this), CH73-322F21 (1) (order this)
    [Fosmid] CH1073-171J23 (1) (order this), CH1073-387M17 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_017354719 (1)
    Genomic GenBank:FP243381 (1) 78713 bp
    Select Tool
    Polypeptide UniProtKB:I3ISM5 (1) 303 aa
    Sequence Information (all 52)
    ORTHOLOGY for rbfox3b ( Chr: 3 )
    CITATIONS (19)