Gene

supt20

ID

ZDB-GENE-091204-264

Name

SPT20 homolog, SAGA complex component

Symbol

supt20 Nomenclature History

Previous Names

fam48a (1)
si:ch211-106i3.6 (1)

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Predicted to have transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to localize to SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With supt20 Human Ortholog

No data available

Associated With supt20 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR046468	Spt20-like, SEP domain
Family	IPR021950	Transcription factor Spt20

Domain Details Per Protein

Protein	Length	Spt20-like, SEP domain	Transcription factor Spt20
UniProtKB:A0A8M2BJZ0 InterPro	779
UniProtKB:A0A8M2BJX2 InterPro	821
UniProtKB:A0A8M2BKJ0 InterPro	813
UniProtKB:F1QKI6 InterPro	822

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	supt20-202 (1) Ensembl	Havana	766 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	supt20-203 (1) Ensembl	Havana	2659 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations