ZFIN ID: ZDB-GENE-091118-91
Gene Name: RAB38c, member of RAS oncogene family
Gene Symbol: rab38c    Nomenclature History

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Previous Name: si:ch73-173m3.3 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have GTPase activity. Predicted to be involved in Rab protein signal transduction and intracellular protein transport. Predicted to localize to the melanosome; mitochondrion; and trans-Golgi network. Is expressed in head. Orthologous to human RAB32 (RAB32, member RAS oncogene family) and RAB38 (RAB38, member RAS oncogene family).
Genome Resources: Alliance (1),  Gene:562524 (1),  Ensembl(GRCz11):ENSDARG00000074719 (1)
GENE EXPRESSION
All Expression Data: Fig. 6 from Coppola et al., 2016
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH rab38c HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH rab38c VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process vesicle-mediated transport (more)
Cellular Component Golgi apparatus (more)
Molecular Function GTPase activity (more)
GO Terms (all 12)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Family IPR001806 Small GTPase
Domain IPR005225 Small GTP-binding protein domain
Homologous_superfamily IPR027417 P-loop containing nucleoside triphosphate hydrolase
Family IPR030697 Ras-related protein Rab29/Rab38/Rab32
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA rab38c-201 (1)    Ensembl 642
Browsers: NCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
CONSTRUCTS WITH SEQUENCES FROM rab38c No data available
MARKER RELATIONSHIPS
rab38c Contained in: [BAC] CH73-173M3 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:XM_005161308 (1)
Genomic GenBank:CT025910 (1) 105261 bp
Select Tool
Polypeptide UniProtKB:E9QJH8 (1) 213 aa
Sequence Information (all 7)
ORTHOLOGY for rab38c ( Chr: 21 )
CITATIONS (12)