ZFIN ID: ZDB-GENE-091116-1
Gene Name: polypyrimidine tract binding protein 3
Gene Symbol: ptbp3    Nomenclature History

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Previous Names: ROD1 (1), si:dkey-27p1.2 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Predicted to have RNA binding activity. Predicted to be involved in mRNA processing. Predicted to localize to the nucleus. Orthologous to human PTBP3 (polypyrimidine tract binding protein 3).
Genome Resources: Alliance (1),  Gene:798982 (1),  Ensembl(GRCz11):ENSDARG00000043757 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2556 Point Mutation Unknown Splice Site ENU
sa5581 Point Mutation Unknown Splice Site ENU
PHENOTYPE No data available
DISEASE ASSOCIATED WITH ptbp3 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ptbp3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process mRNA processing (more)
Cellular Component nucleus (more)
Molecular Function nucleic acid binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR000504 RNA recognition motif domain
Family IPR006536 HnRNP-L/PTB
Homologous_superfamily IPR012677 Nucleotide-binding alpha-beta plait domain superfamily
Domain IPR021790 PTBP1, RNA recognition motif 2-like
Homologous_superfamily IPR035979 RNA-binding domain superfamily
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA ptbp3-202 (1)    Ensembl 1971
Browsers: NCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ptbp3 No data available
MARKER RELATIONSHIPS
ptbp3 Contained in: [BAC] CH211-126I22 (1), DKEY-27P1 (1) (order this)
ptbp3 Encodes: [EST] fj97b06
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:XM_009305171 (1)
Genomic GenBank:BX510369 (1) 168142 bp
Select Tool
Polypeptide UniProtKB:E7FB37 (1) 522 aa
Sequence Information (all 20)
ORTHOLOGY for ptbp3 ( Chr: 10 )
CITATIONS (18)