ZFIN ID: ZDB-GENE-091012-1
Gene Name: solute carrier family 22 (organic cation/carnitine transporter), member 5
Gene Symbol: slc22a5
Sequence Ontology ID : SO:0000704

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Previous Names: octn2 (1), si:ch211-25g7.3

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 2 figures from 2 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
  brain, eye, gill, head (all 10) expand
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12067 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-slc22a5 (1)
    PHENOTYPE
    Data: Fig. 4 from Nilsson et al., 2009
    Observed in: heme biosynthetic process, nucleate erythrocyte hemoglobin complex, nucleate erythrocyte
    DISEASE ASSOCIATED WITH slc22a5 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    systemic primary carnitine deficiency disease Carnitine deficiency, systemic primary 212140
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process carnitine transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function carnitine transmembrane transporter activity (more)
    GO Terms (all 12)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005828
  • InterPro:IPR005829
  • InterPro:IPR020846
  • PROSITE:PS00216
  • PROSITE:PS50850
  • Pfam:PF00083
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA slc22a5-001 (1) 3729
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM slc22a5 No data available
    MARKER RELATIONSHIPS
    slc22a5Contained in: [BAC] CH211-25G7 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_021469264 (1) 3289bp
    Genomic GenBank:CU302316 (1) 166312bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IMT8 549aa
    Sequence Information (all 10)
    OTHER slc22a5 GENE PAGES
  • Gene:100000685 (1)
  • VEGA:OTTDARG00000034898 (1)
  • Ensembl(GRCz10):ENSDARG00000101021 (1)
  • ORTHOLOGY for slc22a5 (Chr: 21)
    CITATIONS (13)