ZFIN ID: ZDB-GENE-091012-1
Gene Name: solute carrier family 22 (organic cation/carnitine transporter), member 5
Gene Symbol: slc22a5

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Previous Name: si:ch211-25g7.3

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(Including Attributions)
Location: Chr: 21 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 3 from Nilsson et al., 2009
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
  head, post-vent region
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12067 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents: MO1-slc22a5 (1)
    PHENOTYPE
    Data: Fig. 4 from Nilsson et al., 2009
    Observed in: heme biosynthetic process, nucleate erythrocyte hemoglobin complex, nucleate erythrocyte
    DISEASE ASSOCIATED WITH slc22a5 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    systemic primary carnitine deficiency disease Carnitine deficiency, systemic primary 212140
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process carnitine transport (more)
    Cellular Component integral component of membrane (more)
    Molecular Function carnitine transmembrane transporter activity (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005828 (1)
  • InterPro:IPR005829 (1)
  • InterPro:IPR020846 (1)
  • PROSITE:PS00216 (1)
  • PROSITE:PS50850 (1)
  • Pfam:PF00083 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA slc22a5-001 (1) 3729
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYSNo data available
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM slc22a5 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    slc22a5Contained in: [BAC] CH211-25G7 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_009295741 (1) 3016bp
    Genomic GenBank:CU302316 (1) 166312bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4IMT8 (1) 549aa
    Sequence Information (all 4)
    OTHER slc22a5 GENE PAGES
  • Gene:100000685 (1)
  • VEGA:OTTDARG00000034898 (1)
  • Ensembl(GRCz10):ENSDARG00000101021 (1)
  • ORTHOLOGY for slc22a5 (Chr: 21)
    Species Symbol Chromosome Accession # Evidence
    Human SLC22A5 5
  • Gene:6584
  • OMIM:603377
  • HGNC:10969
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Mouse Slc22a5 11
  • MGI:1329012
  • Gene:20520
  • Amino acid sequence comparison (1)
    Conserved genome location (synteny) (1)
    Download Curated Orthology
    CITATIONS (14)