ZFIN ID: ZDB-GENE-090828-4
Gene Name: synaptopodin 2-like a
Gene Symbol: synpo2la    Nomenclature History

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Previous Names: chap2 (1), wu:fj80h05

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Involved in cardiac muscle tissue development and skeletal muscle tissue development. Is expressed in heart; heart tube; somite; and trunk. Orthologous to human SYNPO2L (synaptopodin 2 like).
Genome Resources: Alliance (1),  Gene:563843 (1),  Ensembl(GRCz11):ENSDARG00000077293 (1)
GENE EXPRESSION
All Expression Data: 2 figures from Beqqali et al., 2010
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Day 6 (144.0h-168.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa22279 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31924 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35468 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-synpo2la
    2
    CRISPR2-synpo2la
    2
    CRISPR3-synpo2la
    2
    CRISPR4-synpo2la
    2
    CRISPR5-synpo2la
    2
    CRISPR6-synpo2la
    2
    MO1-synpo2la N/A 1
    DISEASE ASSOCIATED WITH synpo2la HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH synpo2la VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cardiac muscle tissue development (more)
    Cellular Component actin cytoskeleton (more)
    Molecular Function actin binding (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA synpo2la-202 (1)    Ensembl 6145
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM synpo2la No data available
    MARKER RELATIONSHIPS
    synpo2la Contained in: [BAC] CH211-127M24, DKEY-237M7 (order this)
    synpo2la Encodes: [EST] fj80h05
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_687207 (1) 5211 nt
    Genomic GenBank:BX324175 222879 nt Blast at MegaBLAST
    Polypeptide UniProtKB:F1RCC9 (1) 1179 aa
    Sequence Information (all 18)
    ORTHOLOGY for synpo2la ( Chr: 13 )
    CITATIONS (16)