ZFIN ID: ZDB-GENE-090506-9
Gene Name: structural maintenance of chromosomes 1A
Gene Symbol: smc1a
Sequence Ontology ID : SO:0000704

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Previous Name: sb:eu719

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(Including Attributions)
Location: Chr: 23 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have ATP binding activity and chromatin binding activity; involved in central nervous system development and developmental growth; predicted to localize to the cohesin complex and  ...
GENE EXPRESSION
All Expression Data: 3 figures from 2 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2005 [eu719]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
PHENOTYPE
Data: 3 figures from Fazio et al., 2016
Observed in:
DISEASE ASSOCIATED WITH smc1a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
Cornelia de Lange syndrome 2 Cornelia de Lange syndrome 2 300590
DISEASE ASSOCIATED WITH smc1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process developmental growth (more)
Cellular Component chromosome (more)
Molecular Function ATP binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR003395 (1)
  • InterPro:IPR010935 (1)
  • InterPro:IPR024704 (1)
  • InterPro:IPR027417 (1)
  • InterPro:IPR029683 (1)
  • InterPro:IPR036277 (1)
  • Pfam:PF02463 (1)
  • Pfam:PF06470 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA smc1a-201 (1) 3745
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM smc1a No data available
    MARKER RELATIONSHIPS
    smc1aContained in: [BAC] DKEY-23G9 (1) (order this)
    smc1aEncodes: [EST] eu719 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001161631 (1) 3741bp
    Genomic GenBank:CR354431 (1) 46932bp
    Select Tool
    Polypeptide UniProtKB:E7F0X6 (1) 1232aa
    Sequence Clusters UniGene:120420 (1)
    Sequence Information (all 9)
    OTHER smc1a GENE PAGES
  • Alliance (1)
  • Gene:559665 (1)
  • VEGA:OTTDARG00000028137 (1)
  • Ensembl(GRCz11):ENSDARG00000055754 (2)
  • ORTHOLOGY for smc1a (Chr: 23)
    CITATIONS (18)