Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-090421-1
Gene Name: ankyrin repeat and KH domain containing 1
Gene Symbol: ankhd1
Location: Chr: 21   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: Fig. 3 from Baraban et al., 2013
MUTANTS AND TARGETED KNOCKDOWNS
Alleles: la028332Tg, sa10239, sa23949
Knockdown reagents: MO1-ankhd1 (1)
PHENOTYPE
Data: text only from Friedrichs et al., 2009
Observed in: atrium, heart contraction
GENE ONTOLOGY
Ontology GO Term
Biological Process heart contraction (more)
Molecular Function RNA binding (more)
GO Terms (all 2)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR002110 (1)
  • InterPro:IPR004087 (1)
  • InterPro:IPR004088 (1)
  • InterPro:IPR020683 (1)
  • PROSITE:PS50084 (1)
  • PROSITE:PS50088 (1)
  • PROSITE:PS50297 (1)
  • Pfam:PF00013 (1)
  • Pfam:PF00023 (1)
  • Pfam:PF12796 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA ankhd1-001 (1) 8535
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM ankhd1 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    ankhd1 Contained in: [BAC] CH211-112G7 (order this), CH211-123O7 (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001199768 (1) 8455 bp
    Genomic GenBank:CR354613 179432 bp
    Select Tool
    Polypeptide UniProtKB:E9QEX9 (1) 2607 aa
    Sequence Clusters UniGene:7647 (1)
    Sequence Information (all 10)
    OTHER ankhd1 GENE PAGES
  • Gene:563327 (1)
  • VEGA:OTTDARG00000031195 (1)
  • Ensembl(Zv9):ENSDARG00000077860 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish ankhd1 21  
    Human ANKHD1 5 (5q31.3)
  • OMIM:610500
  • Gene:54882
  • Mouse Ankhd1 18 ( 19.46 cM)
  • MGI:1921733
  • Gene:108857
  • Orthology Details
    CITATIONS (14)