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ZIRC
ZFIN ID: ZDB-GENE-090313-313
Gene Name: sine oculis binding protein homolog (Drosophila) a
Gene Symbol: sobpa    Nomenclature History

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Previous Name: si:dkey-47e6.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have metal ion binding activity. Orthologous to human SOBP (sine oculis binding protein homolog).
Genome Resources: Alliance (1), Gene:573683 (1), Ensembl(GRCz11):ENSDARG00000054253 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ct168aGt Transgenic Insertion Unknown Unknown DNA
la018562Tg Transgenic Insertion Unknown Unknown DNA
sa42239 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH sobpa HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Mental retardation, anterior maxillary protrusion, and strabismus 613671
    DISEASE ASSOCIATED WITH sobpa VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Molecular Function metal ion binding (more)
    GO Terms (all 1)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR026092 (1)
  • Pfam:PF15279 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA sobpa-201 (1)    Ensembl 2811
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sobpaNo data available
    MARKER RELATIONSHIPS
    sobpaContained in: [BAC] DKEY-47E6 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001098618 (1) 2811bp
    Genomic GenBank:CU019663 (1) 92717bp
    Select Tool
    Polypeptide UniProtKB:A5X7A0 (1) 936aa
    Sequence Clusters UniGene:117591 (1)
    Sequence Information (all 12)
    ORTHOLOGY for sobpa (Chr: 13)
    CITATIONS (18)