ZFIN Gene: si:dkey-219c3.2

ZFIN ID: ZDB-GENE-090313-238

ZFIN ID: ZDB-GENE-090313-238

Gene Name:

si:dkey-219c3.2

Gene Symbol:

si:dkey-219c3.2 Nomenclature History

Previous Name:

Gene Type:

protein_coding_gene

Location:

Chr: 25 Mapping Details/Browsers

Description:

Predicted to have DNA binding activity and transcription factor binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to localize to the transcription factor TFIID complex. Orthologous to human TAF4 (TATA-box binding protein associated factor 4).

Genome Resources:

Alliance (1), Gene:564106 (1), Ensembl(GRCz11):ENSDARG00000075805 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available

MUTATIONS AND SEQUENCE TARGETING REAGENTS

Allele	Type	Localization	Consequence	Mutagen	Suppliers
la023209Tg	Transgenic Insertion	Unknown	Unknown	DNA
sa17606	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa17763	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa24669	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa38065	Point Mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

PHENOTYPE No data available

DISEASE ASSOCIATED WITH si:dkey-219c3.2 HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH si:dkey-219c3.2 VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	DNA-templated transcription, initiation (more)
Cellular Component	transcription factor TFIID complex (more)
Molecular Function	DNA-binding transcription factor activity (more)

GO Terms (all 8)

PROTEIN FAMILIES, DOMAINS AND SITES
InterPro:IPR003894 (1) InterPro:IPR007900 (1) InterPro:IPR009072 (1) InterPro:IPR037249 (1)	PROSITE:PS51119 (1)	Pfam:PF05236 (1) Pfam:PF07531 (1)

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	si:dkey-219c3.2-201 (1)	2946	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: NCBI, Ensembl, ZFIN

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM si:dkey-219c3.2 No data available

MARKER RELATIONSHIPS

si:dkey-219c3.2 Contained in:

[BAC] DKEY-219C3 (1) (order this)

SEQUENCE INFORMATION

Type	Accession #	Length (bp/aa)	Analysis
RNA	RefSeq:XM_005163068 (1)		Select Tool ZFIN BLAST NCBI BLAST MegaBLAST Ensembl UCSC BLAT
Genomic	GenBank:BX927360 (1)	92192 bp	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:E7FFQ2 (1)	976 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast
Sequence Clusters	UniGene:77316 (1)

Sequence Information (all 14)

ORTHOLOGY for si:dkey-219c3.2 ( Chr: 25 )

CITATIONS (15)

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