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General Information
ZIRC
ZFIN ID: ZDB-GENE-090313-107
Gene Name: collagen, type XVII, alpha 1a
Gene Symbol: col17a1a
Sequence Ontology ID : SO:0000704

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Previous Names: col17a1, col17a1b, si:ch211-281g13.3 (1)

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(Including Attributions)
Location: Chr: 1 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have extracellular matrix structural constituent. Involved in epidermis development. Predicted to localize to the extracellular matrix and extracellular space. Human ortholog(s) of this  ...
GENE EXPRESSION
All Expression Data: 5 figures from 3 publications
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Adult (90d-730d, breeding adult)
 
DISEASE ASSOCIATED WITH col17a1a HUMAN ORTHOLOG
Disease Ontology Term OMIM Term OMIM Phenotype ID
junctional epidermolysis bullosa non-Herlitz type Epidermolysis bullosa, junctional, localisata variant 226650
Epidermolysis bullosa, junctional, non-Herlitz type 226650
Epithelial recurrent erosion dystrophy 122400
Epithelial recurrent erosion dystrophy 122400
DISEASE ASSOCIATED WITH col17a1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process epidermis development (more)
Cellular Component integral component of membrane (more)
Molecular Function extracellular matrix structural constituent (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR008160 (1)
  • Pfam:PF01391 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA col17a1a-201 (1) 4745
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM col17a1a No data available
    MARKER RELATIONSHIPS
    col17a1aContained in: [BAC] CH211-281G13 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001145565 (1)
    Genomic GenBank:BX321880 (1) 144139bp
    Select Tool
    Polypeptide UniProtKB:B8A4S4 (1) 1408aa
    Sequence Clusters UniGene:76578 (1)
    Sequence Information (all 14)
    ORTHOLOGY for col17a1a (Chr: 1)
    CITATIONS (21)