ZFIN is now using GRCz12tu for Genomic Data
Gene
col19a1
- ID
- ZDB-GENE-090312-196
- Name
- collagen, type XIX, alpha 1
- Symbol
- col19a1 Nomenclature History
- Previous Names
-
- si:dkey-49l3.2
- stumpy (1)
- sty
- zgc:153049
- Type
- protein_coding_gene
- Location
- Chr: 13 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Acts upstream of or within axon extension involved in axon guidance. Predicted to be located in microfibril. Predicted to be part of collagen type XVI trimer. Is expressed in dermis and myotome. Orthologous to human COL19A1 (collagen type XIX alpha 1 chain).
- Genome Resources
- Note
-
col19a1 is represented by two partial Ensembl gene models in GRCz11
- Comparative Information
-
- All Expression Data
- 3 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Concanavalin A-like lectin/glucanase domain superfamily | Thrombospondin-like, N-terminal domain |
|---|---|---|---|---|
| UniProtKB:Q08BP6 | InterPro | 290 | ||
| UniProtKB:A0A8M9PN13 | InterPro | 800 | ||
| UniProtKB:A0A8M9PU79 | InterPro | 799 | ||
| UniProtKB:A0A8M9PBI4 | InterPro | 802 | ||
| UniProtKB:A0A8M9Q1B4 | InterPro | 803 | ||
| UniProtKB:A0A8M1NA67 | InterPro | 303 | ||
| UniProtKB:A0AC58H2P0 | InterPro | 985 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
col19a1-201
(1)
|
Ensembl | 6,802 nt | ||
| mRNA |
col19a1-202
(1)
|
Ensembl | 1,193 nt | ||
| mRNA |
col19a1-203
(1)
|
Ensembl | 874 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers