ZFIN ID: ZDB-GENE-070725-1
Gene Name: ninein (GSK3B interacting protein)
Gene Symbol: nin    Nomenclature History

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Previous Name: si:ch211-282c13.6

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 13 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Involved in midbrain-hindbrain boundary development and neural tube formation. Predicted to localize to ciliary transition fiber and microtubule cytoskeleton. Is expressed in anterior neural tube; brain; neuroectoderm; and posterior neural tube. Human ortholog(s) of this gene implicated in Seckel syndrome 7. Orthologous to human NIN (ninein).
Genome Resources: Alliance (1),  Gene:571879 (1),  Ensembl(GRCz11):ENSDARG00000060298 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa11058 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11160 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45496 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-nin N/A 1
    DISEASE ASSOCIATED WITH nin HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Seckel syndrome 7 Alliance ?Seckel syndrome 7 614851
    DISEASE ASSOCIATED WITH nin VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process midbrain-hindbrain boundary development (more)
    Cellular Component centrosome (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA nin-201 (1)    Ensembl 7559
    nin-202 (1)    Ensembl 6163
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM nin No data available
    MARKER RELATIONSHIPS
    nin Contained in: [BAC] CH73-321B19 (1), CH211-282C13 (1), DKEY-69E12 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_009307508 (1)
    Genomic GenBank:CT025749 (1) 188450 nt
    Select Tool
    Polypeptide UniProtKB:I3ISQ9 (1) 1954 aa
    Sequence Information (all 27)
    ORTHOLOGY for nin ( Chr: 13 )
    CITATIONS (17)