ZFIN ID: ZDB-GENE-090309-2
Gene Name: transmembrane serine protease 13b
Gene Symbol: tmprss13b    Nomenclature History

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Previous Name: si:ch211-139a5.12

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 5 Mapping Details/Browsers
Description: Predicted to have scavenger receptor activity and serine-type endopeptidase activity. Predicted to be involved in proteolysis. Predicted to localize to the integral component of membrane. Orthologous to human TMPRSS13 (transmembrane serine protease 13).
Genome Resources: Alliance (1),  Gene:564693 (1),  Ensembl(GRCz11):ENSDARG00000077573 (2)
GENE EXPRESSION
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
PHENOTYPE No data available
DISEASE ASSOCIATED WITH tmprss13b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH tmprss13b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process proteolysis (more)
Cellular Component integral component of membrane (more)
Molecular Function hydrolase activity (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Active_site IPR018114 Serine proteases, trypsin family, histidine active site
Active_site IPR033116 Serine proteases, trypsin family, serine active site
Domain IPR001190 SRCR domain
Domain IPR001254 Serine proteases, trypsin domain
Domain IPR017448 SRCR-like domain
Family IPR001314 Peptidase S1A, chymotrypsin family
Homologous_superfamily IPR009003 Peptidase S1, PA clan
Homologous_superfamily IPR036055 LDL receptor-like superfamily
Homologous_superfamily IPR036772 SRCR-like domain superfamily
Repeat IPR002172 Low-density lipoprotein (LDL) receptor class A repeat
TRANSCRIPTS
Type Name Length (nt) Analysis
aberrant processed transcript tmprss13b-204 (1)    Ensembl 547
mRNA tmprss13b-201 (1)    Ensembl 1790
tmprss13b-203 (1)    Ensembl 1004
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM tmprss13b No data available
MARKER RELATIONSHIPS
tmprss13b Contained in: [BAC] CH211-69I14 (1), CH211-139A5 (1)
tmprss13b Encodes: [EST] fk84e06
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001082844 (1) 1857 nt
Genomic GenBank:AL935065 (1) 167740 nt
Select Tool
Polypeptide UniProtKB:A9JTI2 (1) 486 aa
Sequence Information (all 19)
ORTHOLOGY for tmprss13b ( Chr: 5 )
CITATIONS (18)