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ZIRC
ZFIN ID: ZDB-GENE-081107-11
Gene Name: BRCA1 interacting protein C-terminal helicase 1
Gene Symbol: brip1
Sequence Ontology ID : SO:0001217

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Attributions

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Previous Names: fancj (1), Fanconi anemia, complementation group J, si:ch211-158l18.1

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA helicase activity. Predicted to be involved in double-strand break repair involved in meiotic recombination and nucleotide-excision repair. Predicted to localize to the nucleus.  ...
GENE EXPRESSION
All Expression Data: 3 figures from Titus et al., 2009
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hg56 Small Deletion Exon 5 Unknown CRISPR
hg57 Small Deletion Unknown Unknown CRISPR
sa6381 Point Mutation Unknown Premature Stop ENU
sa17274 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa22659 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35900 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH brip1 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    breast cancer {Breast cancer, early-onset, susceptibility to} 114480
    Fanconi anemia complementation group J Fanconi anemia, complementation group J 609054
    DISEASE ASSOCIATED WITH brip1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process nucleobase-containing compound metabolic process (more)
    Cellular Component nucleus (more)
    Molecular Function ATP binding (more)
    GO Terms (all 12)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA brip1-201 (1) 3918
    brip1-202 (1) 649
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM brip1 No data available
    MARKER RELATIONSHIPS
    brip1 Contained in: [BAC] CH211-69P5 (1) (order this), CH211-158L18 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001110296 (1) 3941 bp
    Genomic GenBank:AL954187 (1) 185137 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8S0B7 (1) 1229 aa
    Sequence Clusters UniGene:85128 (1)
    Sequence Information (all 26)
    ORTHOLOGY for brip1 ( Chr: 15 )
    CITATIONS (19)