ZFIN ID: ZDB-GENE-081105-89
Gene Name: si:ch211-254n4.3
Gene Symbol: si:ch211-254n4.3    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have receptor ligand activity. Predicted to localize to extracellular space. Orthologous to human TAFA2 (TAFA chemokine like family member 2) and TAFA3 (TAFA chemokine like family member 3).
Genome Resources: Alliance (1),  Gene:100003386 (1),  Ensembl(GRCz11):ENSDARG00000020292 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa7139 Point Mutation Unknown Premature Stop ENU
sa8387 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-254n4.3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-254n4.3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function receptor ligand activity (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-254n4.3-202 (1)    Ensembl 1728
    ncRNA si:ch211-254n4.3-002 (1)    Ensembl 551
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-254n4.3 No data available
    MARKER RELATIONSHIPS
    si:ch211-254n4.3 Contained in: [BAC] CH211-254N4 (1), DKEY-208O2 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001130795 (1)
    Genomic GenBank:AL954868 (1) 194224 nt
    Select Tool
    Polypeptide UniProtKB:B0R1F7 (1) 132 aa
    Sequence Information (all 10)
    ORTHOLOGY for si:ch211-254n4.3 ( Chr: 8 )
    CITATIONS (13)