ZFIN ID: ZDB-GENE-081105-110
Gene Name: si:ch211-251j10.3
Gene Symbol: si:ch211-251j10.3    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 8 Mapping Details/Browsers
Description: Predicted to have guanyl-nucleotide exchange factor activity. Predicted to be involved in small GTPase mediated signal transduction. Orthologous to human RALGDS (ral guanine nucleotide dissociation stimulator).
Genome Resources: Alliance (1),  Gene:799483 (1),  Ensembl(GRCz11):ENSDARG00000042409 (2)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fcc24Gt Transgenic Insertion Unknown Splicing Variant DNA
la016344Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15004 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa38699 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-251j10.3 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-251j10.3 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process signal transduction (more)
    Molecular Function guanyl-nucleotide exchange factor activity (more)
    GO Terms (all 3)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000159 Ras-associating (RA) domain
    Domain IPR000651 Ras-like guanine nucleotide exchange factor, N-terminal
    Domain IPR001895 Ras guanine-nucleotide exchange factors catalytic domain
    Family IPR008937 Ras-like guanine nucleotide exchange factor
    Family IPR015758 Ral guanine nucleotide dissociation stimulator
    Conserved_site IPR019804 Ras guanine-nucleotide exchange factor, conserved site
    Homologous_superfamily IPR023578 Ras guanine nucleotide exchange factor domain superfamily
    Homologous_superfamily IPR029071 Ubiquitin-like domain superfamily
    Homologous_superfamily IPR036964 Ras guanine-nucleotide exchange factor catalytic domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:ch211-251j10.3-201 (1)    Ensembl 2442
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-251j10.3 No data available
    MARKER RELATIONSHIPS
    si:ch211-251j10.3 Contained in: [BAC] CH211-251J10 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001123317 (1)
    Genomic GenBank:BX640472 (1) 104986 bp
    Select Tool
    Polypeptide UniProtKB:B0S750 (1) 813 aa
    Sequence Information (all 13)
    ORTHOLOGY for si:ch211-251j10.3 ( Chr: 8 )
    CITATIONS (15)