Gene

mxra5b

ID

ZDB-GENE-081104-119

Name

matrix-remodelling associated 5b

Symbol

mxra5b Nomenclature History

Previous Names

sb:eu697
si:ch211-141h12.1

Type

protein_coding_gene

Location

Chr: 9 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane. Is expressed in adaxial cell; apical ectodermal ridge pectoral fin bud; fin fold pectoral fin bud; myotome; and pharyngeal arch. Orthologous to human MXRA5 (matrix remodeling associated 5).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

6 figures from Thisse et al., 2005

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

eu697 (14 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With mxra5b Human Ortholog

No data available

Associated With mxra5b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000483	Cysteine-rich flanking region, C-terminal
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR007110	Immunoglobulin-like domain
Domain	IPR013098	Immunoglobulin I-set
Domain	IPR013106	Immunoglobulin V-set domain
Family	IPR050467	Leucine-rich repeat and fibronectin type-III domain-containing
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Length	Cysteine-rich flanking region, C-terminal	Immunoglobulin domain subtype	Immunoglobulin I-set	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype 2	Immunoglobulin V-set domain	Leucine-rich repeat	Leucine-rich repeat and fibronectin type-III domain-containing	Leucine-rich repeat domain superfamily	Leucine-rich repeat, typical subtype
UniProtKB:F1QHX4 InterPro	2548

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	mxra5b-201 (1) Ensembl	Ensembl	8,196 nt	Select Tool
mRNA	mxra5b-202 (1) Ensembl	Ensembl	7,996 nt	Select Tool ZFIN BLAST
mRNA	mxra5b-203 (1) Ensembl	Ensembl	8,310 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations