ZFIN ID: ZDB-GENE-081027-3
Gene Name: si:dkey-237h12.3
Gene Symbol: si:dkey-237h12.3    Nomenclature History

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Previous Name: sb:eu654

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have cell adhesion molecule binding activity; protein heterodimerization activity; and protein homodimerization activity. Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and neuron development. Predicted to localize to the neuron projection. Is expressed in alar plate midbrain region and optic tectum. Orthologous to human TENM3 (teneurin transmembrane protein 3).
Genome Resources: Alliance (1),  Gene:567508 (1),  Ensembl(GRCz11):ENSDARG00000087599 (1)

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Directly Submitted Expression Data: 6 figures (4 images) from Thisse et al., 2005 [eu654]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH si:dkey-237h12.3 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH si:dkey-237h12.3 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process signal transduction (more)
Cellular Component integral component of membrane (more)
Molecular Function calcium ion binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR000742 EGF-like domain
Domain IPR001881 EGF-like calcium-binding domain
Repeat IPR006530 YD repeat
Homologous_superfamily IPR008969 Carboxypeptidase-like, regulatory domain superfamily
Domain IPR009471 Teneurin intracellular, N-terminal
Homologous_superfamily IPR011042 Six-bladed beta-propeller, TolB-like
Conserved_site IPR013032 EGF-like, conserved site
Domain IPR022385 Rhs repeat-associated core
Domain IPR028916 Tox-GHH domain
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA si:dkey-237h12.3-202 (1)    Ensembl 8572
Browsers: NCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM si:dkey-237h12.3 No data available
MARKER RELATIONSHIPS
si:dkey-237h12.3 Contained in: [BAC] DKEY-237H12 (1) (order this), DKEYP-115G4 (1)
si:dkey-237h12.3 Encodes: [EST] eu654 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:XM_021472883 (1)
Genomic GenBank:CR931784 (1) 223042 bp Blast at MegaBLAST
Polypeptide UniProtKB:F1QK75 (1) 2688 aa
Sequence Information (all 20)
ORTHOLOGY for si:dkey-237h12.3 ( Chr: 14 )
CITATIONS (13)