ZFIN ID: ZDB-GENE-081022-124
Gene Name: tubulin, gamma complex associated protein 4
Gene Symbol: tubgcp4
Sequence Ontology ID : SO:0000704

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Attributions

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Previous Names: zgc:194561, zgc:194580

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to contribute to microtubule minus-end binding activity; involved in retinal cone cell differentiation and retinal rod cell differentiation; predicted to localize to the gamma-tubulin  ...
GENE EXPRESSION
All Expression Data: text only from Scheidecker et al., 2015
Wild-type Stages, Structures: Hatching:Long-pec (48.0h-60.0h) to Hatching:Long-pec (48.0h-60.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2377 Point Mutation Unknown Splice Site ENU
sa8846 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21080 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41027 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: 2 figures from Scheidecker et al., 2015
    Observed in:
    DISEASE ASSOCIATED WITH tubgcp4 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    microcephaly and chorioretinopathy 3 Microcephaly and chorioretinopathy, autosomal recessive, 3 616335
    DISEASE ASSOCIATED WITH tubgcp4 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process retinal cone cell differentiation (more)
    Cellular Component cytoplasm (more)
    Molecular Function gamma-tubulin binding (more)
    GO Terms (all 21)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR007259 (1)
  • InterPro:IPR040457 (1)
  • InterPro:IPR041470 (1)
  • Pfam:PF04130 (1)
  • Pfam:PF17681 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA tubgcp4-002 (1) 436
    mRNA tubgcp4-202 (1) 3185
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM tubgcp4 No data available
    MARKER RELATIONSHIPS
    tubgcp4Encodes: [cDNA] MGC:194561 (1), MGC:194580 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001135130 (1) 2200bp
    Polypeptide UniProtKB:F6PFE9 (1) 697aa
    Sequence Clusters UniGene:83137 (1)
    Sequence Information (all 12)
    OTHER tubgcp4 GENE PAGES
  • Alliance (1)
  • Gene:557155 (1)
  • VEGA:OTTDARG00000044060 (1)
  • Ensembl(GRCz11):ENSDARG00000005374 (2)
  • ORTHOLOGY for tubgcp4 (Chr: 7)
    CITATIONS (15)