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ZIRC
ZFIN ID: ZDB-GENE-081022-10
Gene Name: paired box 10
Gene Symbol: pax10    Nomenclature History

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Previous Names: pax10a (1), pax6.2 (1), pax6l, zgc:193504, zgc:193533

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have sequence-specific DNA binding activity. Involved in retina development in camera-type eye. Predicted to localize to the nucleus. Is expressed in brain; eye; head; retina; and testis.
Genome Resources: Alliance (1),  Gene:100192208 (1),  Ensembl(GRCz11):ENSDARG00000053364 (1)
GENE EXPRESSION
All Expression Data: 4 figures from 3 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa30835 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-pax10 N/A 1
    PHENOTYPE
    Data: Fig. 7 from Ravi et al., 2013
    Observed in:
    DISEASE ASSOCIATED WITH pax10 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pax10 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process retina development in camera-type eye (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 5)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pax10-201 (1)    Ensembl 941
    pax10-202 (1)    Ensembl 1043
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pax10
    Construct Regulatory Regions Coding Sequences Species Tg Lines Publications
    Tg(pax6lCE1:GFP) pax10 GFP Danio rerio 1 3
    Tg(pax6lCE2:mCherry) pax10 mCherry Danio rerio 1 3
    MARKER RELATIONSHIPS
    pax10 Contained in: [BAC] CH73-367P23 (1) (order this)
    pax10 Encodes: [cDNA] MGC:193504 (1), MGC:193533 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001136245 (1) 945 bp
    Genomic GenBank:FP236454 (1) 80694 bp
    Select Tool
    Polypeptide UniProtKB:V5ZE41 (1) 276 aa
    Sequence Clusters UniGene:52129 (1)
    Sequence Information (all 21)
    ORTHOLOGY for pax10 ( Chr: 3 )
    CITATIONS (17)