ZFIN ID: ZDB-GENE-080926-4
Gene Name: polybromo 1
Gene Symbol: pbrm1    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Name:

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and chromatin binding activity. Predicted to be involved in chromatin remodeling. Predicted to localize to RSC-type complex. Is expressed in somite. Orthologous to human PBRM1 (polybromo 1).
Genome Resources: Alliance (1),  Gene:565366 (1),  Ensembl(GRCz11):ENSDARG00000003877 (2)
GENE EXPRESSION
All Expression Data: Fig. 4 from Armant et al., 2013
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa970 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa17189 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa27716 Point Mutation Unknown Premature Stop ENU
    sa31811 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa31812 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa35009 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa41765 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-pbrm1 N/A 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH pbrm1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH pbrm1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process chromatin remodeling (more)
    Cellular Component nucleus (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 8)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA pbrm1-201 (1)    Ensembl 5413
    pbrm1-202 (1)    Ensembl 5756
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM pbrm1 No data available
    MARKER RELATIONSHIPS
    pbrm1 Contained in: [BAC] CH211-80B12 (1)
    [Fosmid] ZFOS-302B3 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_009305786 (1)
    Genomic GenBank:CR450797 (1) 101488 nt
    Select Tool
    Polypeptide UniProtKB:E7F8D8 (1) 1627 aa
    Sequence Information (all 13)
    ORTHOLOGY for pbrm1 ( Chr: 11 )
    CITATIONS (20)