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ZIRC
ZFIN ID: ZDB-GENE-080806-1
Gene Name: Ral GTPase activating protein catalytic subunit alpha 1
Gene Symbol: ralgapa1    Nomenclature History

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Previous Names: garnl1, tulip1 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 17 Mapping Details/Browsers
Description: Predicted to have GTPase activator activity. Involved in brain development. Predicted to localize to the cytoplasm. Is expressed in head. Orthologous to human RALGAPA1 (Ral GTPase activating protein catalytic alpha subunit 1).
Genome Resources: Alliance (1),  Gene:556427 (1),  Ensembl(GRCz11):ENSDARG00000076889 (2)
GENE EXPRESSION
All Expression Data: Fig. 4 from Shimojima et al., 2009
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa9808 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11505 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14320 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15393 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa15658 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa23016 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42883 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42884 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-ralgapa1 N/A 1
    MO2-ralgapa1 N/A 1
    PHENOTYPE
    Data: 2 figures from Shimojima et al., 2009
    Observed in:
    DISEASE ASSOCIATED WITH ralgapa1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ralgapa1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process brain development (more)
    Cellular Component nucleus (more)
    Molecular Function GTPase activator activity (more)
    GO Terms (all 6)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ralgapa1-203 (1)    Ensembl 7844
    ralgapa1-204 (1)    Ensembl 593
    ralgapa1-206 (1)    Ensembl 926
    ncRNA ralgapa1-004 (1) 422
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ralgapa1 No data available
    MARKER RELATIONSHIPS
    ralgapa1 Contained in: [BAC] CH211-223H7 (1) (order this), DKEYP-33B5 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001146304 (1) 7866 bp
    Genomic GenBank:BX649530 (1) 150656 bp
    Select Tool
    Polypeptide UniProtKB:A0A2R8Q8N1 (1) 2152 aa
    Sequence Clusters UniGene:60457 (1)
    Sequence Information (all 39)
    ORTHOLOGY for ralgapa1 ( Chr: 17 )
    CITATIONS (17)