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General Information
ZIRC
ZFIN ID: ZDB-GENE-080722-29
Gene Name: notochord granular surface
Gene Symbol: ngs
Sequence Ontology ID : SO:0001217

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Attributions

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Previous Names: chordostatin (1), zgc:194470

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
A structural constituent of cytoskeleton. Involved in notochord cell development and notochord morphogenesis. Predicted to localize to the intermediate filament. Is expressed in notochord.
GENE EXPRESSION
All Expression Data: Fig. 2 from Tong et al., 2013
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la835-2Tg Transgenic Insertion Unknown Unknown DNA
Targeting reagents:
DISEASE ASSOCIATED WITH ngs HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ngs VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process notochord cell development (more)
Cellular Component intermediate filament (more)
Molecular Function structural constituent of cytoskeleton (more)
GO Terms (all 4)
TRANSCRIPTS
Type Name Length (bp) Analysis
ncRNA ngs-002 (1) 539
mRNA ngs-202 (1) 2388
GENE PRODUCT DESCRIPTION
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ngs No data available
MARKER RELATIONSHIPS
ngs Contained in: [BAC] CH73-352P4 (1) (order this)
ngs Encodes: [cDNA] MGC:194470 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001128765 (1) 1687 bp
Genomic GenBank:CU571169 (1) 104729 bp
Select Tool
Polypeptide UniProtKB:B3DI58 (1) 539 aa
Sequence Clusters UniGene:77651 (1)
Sequence Information (all 15)
ORTHOLOGY for ngs ( Chr: 4 )
CITATIONS (15)