ZFIN ID: ZDB-GENE-080722-29
Gene Name: notochord granular surface
Gene Symbol: ngs    Nomenclature History

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Attributions

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Previous Names: chordostatin (1), zgc:194470

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 4 Mapping Details/Browsers
Description: A structural constituent of cytoskeleton. Involved in notochord cell development and notochord morphogenesis. Predicted to localize to intermediate filament. Is expressed in notochord.
Genome Resources: Alliance (1),  Gene:572199 (1),  Ensembl(GRCz11):ENSDARG00000054321 (1)
GENE EXPRESSION
All Expression Data: Fig. 2 from Tong et al., 2013
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la835-2Tg Transgenic Insertion Unknown Unknown DNA
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-ngs N/A 1
DISEASE ASSOCIATED WITH ngs HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH ngs VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process notochord cell development (more)
Cellular Component intermediate filament (more)
Molecular Function structural constituent of cytoskeleton (more)
GO Terms (all 4)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA ngs-202 (1)    Ensembl 2388
ncRNA ngs-002 (1) 539
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM ngs No data available
MARKER RELATIONSHIPS
ngs Contained in: [BAC] CH73-352P4 (1)
ngs Encodes: [cDNA] MGC:194470 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001128765 (1) 1687 nt
Genomic GenBank:CU571169 (1) 104729 nt
Select Tool
Polypeptide UniProtKB:B3DI58 (1) 539 aa
Sequence Information (all 14)
ORTHOLOGY for ngs ( Chr: 4 )
CITATIONS (17)