ZFIN ID: ZDB-GENE-080618-3
Gene Name: PR domain containing 1c, with ZNF domain
Gene Symbol: prdm1c    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 20 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone deacetylase binding activity. Predicted to be involved in cell fate commitment and regulation of transcription by RNA polymerase II. Predicted to localize to cytoplasm and nucleus. Orthologous to human PRDM1 (PR/SET domain 1).
Genome Resources: Alliance (1),  Gene:100150534 (1), 
GENE EXPRESSION
All Expression Data: 2 figures from Sun et al., 2008
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Hatching:Long-pec (48.0h-60.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Sequence Targeting Reagents
Targeting Reagent Created Alleles Publications
MO1-prdm1c N/A 1
PHENOTYPE No data available
DISEASE ASSOCIATED WITH prdm1c HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH prdm1c VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY No data available
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
ncRNA prdm1c-004 (1) 296
Browsers: NCBI
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM prdm1c No data available
MARKER RELATIONSHIPS
prdm1c Contained in: [BAC] CH211-161E1 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:XM_017352572 (1)
Genomic GenBank:CU138532 (1) 133488 nt
Select Tool
Polypeptide UniProtKB:A9QTG5 (1) 135 aa
Sequence Information (all 11)
ORTHOLOGY for prdm1c ( Chr: 20 )
CITATIONS (10)