ZFIN ID: ZDB-GENE-080618-2
Gene Name: PR domain containing 1b, with ZNF domain
Gene Symbol: prdm1b    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have DNA-binding transcription factor activity; RNA polymerase II regulatory region sequence-specific DNA binding activity; and chromatin DNA binding activity. Predicted to localize to the nucleus. Is expressed in retina and somite. Orthologous to human PRDM1 (PR/SET domain 1) and CRYBG2 (crystallin beta-gamma domain containing 2).
Genome Resources: Alliance (1),  Gene:110437762 (1),  Ensembl(GRCz11):ENSDARG00000098925 (1)
GENE EXPRESSION
All Expression Data: 2 figures from Sun et al., 2008
Wild-type Stages, Structures: Cleavage:2-cell (0.75h-1.0h) to Hatching:Long-pec (48.0h-60.0h)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH prdm1b HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH prdm1b VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process cell fate commitment (more)
Cellular Component cytoplasm (more)
Molecular Function chromatin DNA binding (more)
GO Terms (all 8)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR001214 SET domain
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA prdm1b-001 (1) 8241
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM prdm1b No data available
MARKER RELATIONSHIPS
prdm1b Contained in: [BAC] CH73-381H8 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:XM_021468195 (1)
Genomic GenBank:CU693379 (1) 71405 bp
Select Tool
Polypeptide UniProtKB:A0A2R8Q3S6 (1) 471 aa
Sequence Information (all 18)
ORTHOLOGY for prdm1b ( Chr: 19 )
CITATIONS (12)