Gene

vps39

ID
ZDB-GENE-080530-2
Name
VPS39 subunit of HOPS complex
Symbol
vps39 Nomenclature History
Previous Names
  • lbk (1)
  • vam6 (1)
Type
protein_coding_gene
Location
Chr: 17 Mapping Details/Browsers
Description
Predicted to have Rab GTPase binding activity. Involved in developmental pigmentation; eye development; and vesicle-mediated transport. Predicted to localize to cytoplasm and membrane. Is expressed in brain; digestive system; head; and integument. Orthologous to human VPS39 (VPS39 subunit of HOPS complex).
Genome Resources
Note
None
Expression
All Expression Data
2 figures from Schonthaler et al., 2008
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
8 figures from Schonthaler et al., 2008
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With vps39 Human Ortholog
No data available
Associated With vps39 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001180 Citron homology (CNH) domain
Domain IPR019452 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1
Domain IPR019453 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2
Family IPR032914 Vam6/VPS39/TRAP1 family
Repeat IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
Domain Details Per Protein
Protein Length Citron homology (CNH) domain Clathrin, heavy chain/VPS, 7-fold repeat Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 1 Vacuolar sorting protein 39/Transforming growth factor beta receptor-associated domain 2 Vam6/VPS39/TRAP1 family
UniProtKB:B0EXK3 875
UniProtKB:F1RCV6 875
UniProtKB:X1WG99 851
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Gene Tree
Ensembl
Citations