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ZIRC
ZFIN ID: ZDB-GENE-080327-15
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Gene Name: leucine rich repeat transmembrane neuronal 4 like 1
Gene Symbol: lrrtm4l1    Nomenclature History

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Previous Name: sc:d0341

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 10 Mapping Details/Browsers
Description: Exhibits identical protein binding activity. Predicted to localize to the extracellular matrix and extracellular space. Is expressed in brain; central nervous system; and retina. Orthologous to human LRRTM4 (leucine rich repeat transmembrane neuronal 4).
Genome Resources: Alliance (1),  Gene:100000724 (1),  Ensembl(GRCz11):ENSDARG00000080015 (1)
GENE EXPRESSION
All Expression Data: 8 figures from 3 publications
Directly Submitted Expression Data: 6 figures (8 images) from Thisse et al., 2008 [cssl:d0341]
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Larval:Day 4 (96.0h-120.0h)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hu3329 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa11361 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa21708 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
    • sa44722 Point Mutation Unknown Unknown ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lrrtm4l1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lrrtm4l1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function identical protein binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001611 (1)
  • InterPro:IPR003591 (1)
  • InterPro:IPR032675 (1)
  • PROSITE:PS51450 (1)
  • Pfam:PF13855 (1)
    • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA lrrtm4l1-202 (1)    Ensembl 1668
    Select Tool
    Browsers: NCBI,  Ensembl,  ZFIN
    INTERACTIONS AND PATHWAYS
    SignaFish
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lrrtm4l1 No data available
    MARKER RELATIONSHIPS
    lrrtm4l1 Contained in: [BAC] CH211-276D14 (1) (order this)
    lrrtm4l1 Encodes: [EST] cssl:d0341 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_001340833 (1)
    Select Tool
    Genomic GenBank:BX293550 (1) 75613 bp
    Select Tool
    Polypeptide UniProtKB:F1QVN0 (1) 588 aa
    Select Tool
    Sequence Clusters UniGene:116638 (1)
    Sequence Information (all 16)
    ORTHOLOGY for lrrtm4l1 ( Chr: 10 )
    CITATIONS (22)