ZFIN ID: ZDB-GENE-080327-12
Gene Name: leucine rich repeat containing 38a
Gene Symbol: lrrc38a    Nomenclature History

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: lrrc38, sc:d0332 (1), si:ch211-145d10.6

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 23 Mapping Details/Browsers
Description: Predicted to have ion channel binding activity; potassium channel activator activity; and voltage-gated potassium channel activity. Predicted to localize to the voltage-gated potassium channel complex. Is expressed in diencephalon; habenula; hypothalamus; and retinal inner nuclear layer. Orthologous to human LRRC38 (leucine rich repeat containing 38).
Genome Resources: Alliance (1),  Gene:567935 (1),  Ensembl(GRCz11):ENSDARG00000075147 (2)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa15979 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH lrrc38a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH lrrc38a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component integral component of membrane (more)
    Molecular Function ion channel binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Domain IPR000372 Leucine-rich repeat N-terminal domain
    Domain IPR000483 Cysteine-rich flanking region, C-terminal
    Repeat IPR001611 Leucine-rich repeat
    Repeat IPR003591 Leucine-rich repeat, typical subtype
    Homologous_superfamily IPR032675 Leucine-rich repeat domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA lrrc38a-201 (1)    Ensembl 1143
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM lrrc38a No data available
    MARKER RELATIONSHIPS
    lrrc38a Contained in: [BAC] CH73-160E9 (1), CH211-145D10 (1)
    lrrc38a Encodes: [EST] cssl:d0332 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_691249 (1) 2036 bp
    Genomic GenBank:AL929508 (1) 180029 bp
    Select Tool
    Polypeptide UniProtKB:F1Q7W4 (1) 290 aa
    Sequence Information (all 14)
    ORTHOLOGY for lrrc38a ( Chr: 23 )
    CITATIONS (16)