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ZIRC
ZFIN ID: ZDB-GENE-080225-6
Gene Name: si:ch211-197n1.2
Gene Symbol: si:ch211-197n1.2    Nomenclature History

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Previous Name: im:7149000 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 1 Mapping Details/Browsers
Description: Predicted to have calcium ion binding activity. Is expressed in central nervous system and tegmentum.
Genome Resources: Alliance (1),  Gene:553519 (1), 

Nomenclature Note: This gene is derived from the zebrafish genome sequencing and annotation project. When more is known about the gene, the current nomenclature will be replaced with more traditional zebrafish gene nomenclature. The prefix 'si:' indicates that this gene is represented by annotated genomic sequence from the Sanger Institute.

GENE EXPRESSION
Directly Submitted Expression Data: 7 figures (11 images) from Thisse et al., 2004 [IMAGE:7149000]
Wild-type Stages, Structures: Segmentation:14-19 somites (16.0h-19.0h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa12598 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zko334b Small Deletion Unknown Unknown CRISPR
  • China Zebrafish Resource Center (CZRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-si:ch211-197n1.2 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH si:ch211-197n1.2 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH si:ch211-197n1.2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Cellular Component cellular_component (more)
    Molecular Function calcium ion binding (more)
    GO Terms (all 2)
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA si:dkey-256e7.5-201 (1)    Ensembl 1375
    Browsers: NCBI
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM si:ch211-197n1.2 No data available
    MARKER RELATIONSHIPS
    si:ch211-197n1.2 Contained in: [BAC] CH211-197N1 (1) (order this)
    si:ch211-197n1.2 Encodes: [EST] IMAGE:7149000 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:XM_005168366 (1)
    Genomic GenBank:CT033830 (1) 140973 bp
    Select Tool
    Polypeptide UniProtKB:Q5CZN4 (1) 358 aa
    Sequence Clusters UniGene:38466 (1)
    Sequence Information (all 19)
    ORTHOLOGY for si:ch211-197n1.2 ( Chr: 1 )
    CITATIONS (12)