Gene
arid1aa
- ID
- ZDB-GENE-080220-35
- Name
- AT rich interactive domain 1Aa (SWI-like)
- Symbol
- arid1aa Nomenclature History
- Previous Names
-
- fb79b07
- fb95g08
- wu:fb79b07
- wu:fb95g08
- zgc:171438
- Type
- protein_coding_gene
- Location
- Chr: 16 Mapping Details/Browsers
- Description
- Predicted to contribute to nucleosome binding activity. Predicted to be involved in ATP-dependent chromatin remodeling; positive regulation of transcription, DNA-templated; and regulation of transcription by RNA polymerase II. Predicted to localize to SWI/SNF complex; nBAF complex; and nucleoplasm. Is expressed in hindbrain and neurons. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 2 and neuroblastoma. Orthologous to human ARID1A (AT-rich interaction domain 1A).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 4 figures from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7144643 (6 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Disease Ontology Term | Multi-Species Data | OMIM Term | OMIM Phenotype ID |
---|---|---|---|
Coffin-Siris syndrome 2 | Alliance | Coffin-Siris syndrome 2 | 614607 |
Domain, Family, and Site Summary
Type | InterPro ID | Name |
---|---|---|
Domain | IPR001304 | C-type lectin-like |
Domain | IPR001606 | ARID DNA-binding domain |
Domain | IPR033388 | SWI/SNF-like complex subunit BAF250, C-terminal |
Family | IPR021906 | SWI/SNF-like complex subunit BAF250/Osa |
Family | IPR030094 | SWI/SNF-like complex subunit BAF250a |
Homologous_superfamily | IPR016186 | C-type lectin-like/link domain superfamily |
Homologous_superfamily | IPR016187 | C-type lectin fold |
Homologous_superfamily | IPR036431 | ARID DNA-binding domain superfamily |
Domain Details Per Protein
Protein | Length | ARID DNA-binding domain | ARID DNA-binding domain superfamily | C-type lectin fold | C-type lectin-like | C-type lectin-like/link domain superfamily | SWI/SNF-like complex subunit BAF250a | SWI/SNF-like complex subunit BAF250, C-terminal | SWI/SNF-like complex subunit BAF250/Osa |
---|---|---|---|---|---|---|---|---|---|
UniProtKB:B0BLV4
|
129 | ||||||||
UniProtKB:A0A0R4IVD0
|
2285 | ||||||||
UniProtKB:A0A0R4IKJ3
|
2286 |
Type | Name | Length (nt) | Analysis |
---|---|---|---|
mRNA |
arid1aa-201
(1)
|
8160 nt |
Interactions and Pathways
No data available
Plasmids
No data available