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ZIRC
ZFIN ID: ZDB-GENE-080220-35
Gene Name: AT rich interactive domain 1Aa (SWI-like)
Gene Symbol: arid1aa    Nomenclature History

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Previous Names: fb79b07, fb95g08, wu:fb79b07, wu:fb95g08, zgc:171438

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 16 Mapping Details/Browsers
Description: Predicted to have DNA binding activity. Predicted to be involved in chromatin remodeling. Predicted to localize to the SWI/SNF complex. Human ortholog(s) of this gene implicated in Coffin-Siris syndrome 2 and neuroblastoma. Is expressed in hindbrain and neurons. Orthologous to several human genes including REG4 (regenerating family member 4).
Genome Resources: Alliance (1),  Gene:100141358 (1),  Ensembl(GRCz11):ENSDARG00000101710 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 4 figures (6 images) from Thisse et al., 2004 [IMAGE:7144643]
Wild-type Stages, Structures: Segmentation:20-25 somites (19.0h-22.0h) to Hatching:Long-pec (48.0h-60.0h)
 
PHENOTYPE No data available
DISEASE ASSOCIATED WITH arid1aa HUMAN ORTHOLOG
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
Coffin-Siris syndrome 2 Alliance Coffin-Siris syndrome 2 614607
DISEASE ASSOCIATED WITH arid1aa VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process chromatin remodeling (more)
Cellular Component brahma complex (more)
Molecular Function DNA binding (more)
GO Terms (all 11)
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA arid1aa-201 (1)    Ensembl 8160
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM arid1aa No data available
MARKER RELATIONSHIPS
arid1aa Contained in: [BAC] CH211-15N24 (1) (order this), CH211-134G22 (1) (order this)
arid1aa Encodes: [EST] fb79b07, fb95g08, IMAGE:7144643 (1) (order this)
[cDNA] MGC:171438 (1) (order this)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001114923 (1) 1924 bp
Genomic GenBank:BX649265 (1) 178901 bp
Select Tool
Polypeptide UniProtKB:A0A0R4IKJ3 (1) 2286 aa
Sequence Clusters UniGene:105261 (1)
Sequence Information (all 24)
ORTHOLOGY for arid1aa ( Chr: 16 )
CITATIONS (21)