ZFIN ID: ZDB-GENE-080219-30
Gene Name: scratch family zinc finger 1a
Gene Symbol: scrt1a    Nomenclature History

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Previous Names: sb:eu669, zgc:172288

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have DNA binding activity and DNA-binding transcription factor activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to the nucleus. Is expressed in nervous system; neural tube; and spinal cord neural rod. Orthologous to human SCRT1 (scratch family transcriptional repressor 1).
Genome Resources: Alliance (1),  Gene:564658 (1),  Ensembl(GRCz11):ENSDARG00000100821 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available
PHENOTYPE No data available
DISEASE ASSOCIATED WITH scrt1a HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH scrt1a VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process regulation of transcription, DNA-templated (more)
Cellular Component nucleus (more)
Molecular Function metal ion binding (more)
GO Terms (all 6)
PROTEIN FAMILIES, DOMAINS AND SITES
Type InterPro ID Name
Domain IPR013087 Zinc finger C2H2-type
Family IPR029794 Transcriptional repressor SCRATCH 1/2
Homologous_superfamily IPR036236 Zinc finger C2H2 superfamily
TRANSCRIPTS No data available
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM scrt1a No data available
MARKER RELATIONSHIPS
scrt1a Encodes: [EST] eu669 (1)
[cDNA] MGC:172288 (1), MGC:198075 (1), MGC:198081 (1)
SEQUENCE INFORMATION
Type Accession # Length (bp/aa) Analysis
RNA RefSeq:NM_001113601 (1) 1357 bp
Genomic GenBank:CABZ01079792 (1) 13964 bp
Polypeptide UniProtKB:A8WGA5 (1) 279 aa
Sequence Information (all 18)
ORTHOLOGY for scrt1a ( Chr: 19 )
CITATIONS (17)