ZFIN ID: ZDB-GENE-080215-1
Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2
Gene Symbol: smarcd2    Nomenclature History

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 12 Mapping Details/Browsers
Description: Involved in hematopoietic progenitor cell differentiation and neutrophil differentiation. Predicted to localize to SWI/SNF complex. Orthologous to human SMARCD2 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2).
Genome Resources: Alliance (1),  Gene:564317 (1),  Ensembl(GRCz11):ENSDARG00000088877 (2)
GENE EXPRESSION No data available
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
gl35 Insertion Unknown Frameshift CRISPR
sa13736 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa45453 Point Mutation Unknown Premature Stop ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-smarcd2
    1
    CRISPR2-smarcd2
    1
    CRISPR3-smarcd2 1
    CRISPR4-smarcd2
    1
    MO1-smarcd2 N/A 1
    MO2-smarcd2 N/A 2
    MO3-smarcd2 N/A 1
    MO4-smarcd2 N/A 1
    PHENOTYPE
    Data: 2 figures from Witzel et al., 2017
    Observed in:
    DISEASE ASSOCIATED WITH smarcd2 HUMAN ORTHOLOG
    Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
    Specific granule deficiency 2 617475
    DISEASE ASSOCIATED WITH smarcd2 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process hematopoietic progenitor cell differentiation (more)
    Cellular Component SWI/SNF complex (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    aberrant processed transcript smarcd2-202 (1)    Ensembl 724
    mRNA smarcd2-201 (1)    Ensembl 3116
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM smarcd2 No data available
    MARKER RELATIONSHIPS
    smarcd2 Contained in: [BAC] CH73-103L1 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_687657 (1) 3195 nt
    Genomic GenBank:CU459020 (1) 114759 nt
    Select Tool
    Polypeptide UniProtKB:E7EYW7 (1) 501 aa
    Sequence Information (all 10)
    ORTHOLOGY for smarcd2 ( Chr: 12 )
    CITATIONS (18)