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ZIRC
ZFIN ID: ZDB-GENE-080204-68
Gene Name: cytochrome P450, family 27, subfamily C, polypeptide 1
Gene Symbol: cyp27c1    Nomenclature History

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Previous Names: sb:eu635, zgc:172278 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 6 Mapping Details/Browsers
Description: Is expressed in several structures, including immature eye; margin; retina; spinal cord; and yolk syncytial layer. Orthologous to human CYP27C1 (cytochrome P450 family 27 subfamily C member 1).
Genome Resources: Alliance (1),  Gene:558396 (1),  Ensembl(GRCz11):ENSDARG00000092660 (2)
GENE EXPRESSION
All Expression Data: 7 figures from 2 publications
Directly Submitted Expression Data: 6 figures (17 images) from Thisse et al., 2005 [eu635]
Wild-type Stages, Structures: Blastula:30%-epiboly (4.66h-5.25h) to Hatching:Long-pec (48.0h-60.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa2308 Point Mutation Unknown Premature Stop ENU
sa7591 Point Mutation Unknown Missense ENU
sa10938 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa14231 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa33808 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • zf691 Small Deletion Unknown Unknown TALEN
    zf692 Small Deletion Unknown Unknown TALEN
    zf693 Indel Unknown Unknown TALEN
    zf694 Small Deletion Unknown Unknown TALEN
    zf695 Insertion Unknown Unknown TALEN
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    TALEN1-cyp27c1 1
    TALEN2-cyp27c1 1
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH cyp27c1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH cyp27c1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY No data available
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA cyp27c1-201 (1)    Ensembl 2623
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM cyp27c1 No data available
    MARKER RELATIONSHIPS
    cyp27c1 Contained in: [BAC] DKEY-32H20 (1) (order this)
    cyp27c1 Encodes: [EST] eu635 (1)
    [cDNA] MGC:172278 (1) (order this), MGC:198303 (1) (order this), MGC:198305 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001113337 (1) 2604 bp
    Genomic GenBank:BX927387 (1) 175517 bp
    Select Tool
    Polypeptide UniProtKB:F1QMI2 (1) 571 aa
    Sequence Clusters UniGene:11380 (1)
    Sequence Information (all 21)
    ORTHOLOGY for cyp27c1 ( Chr: 6 )
    CITATIONS (22)